PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gorai.009G073100.1
Common NameB456_009G073100, LOC105767532
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family bHLH
Protein Properties Length: 264aa    MW: 29810 Da    PI: 5.7847
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gorai.009G073100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH45.99.8e-1571123155
                         CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                 HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         ++ +hn+ Er RR+++N+ ++ Lr+llP a   + kKls  +++ +A +YI +Lq
  Gorai.009G073100.1  71 KKLNHNASERDRRKKVNNMYSSLRSLLPVA--DQTKKLSFPATVSHALKYIPELQ 123
                         6789*************************6..48888***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.94870122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1671142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.65E-1371127No hitNo description
PfamPF000106.7E-1271123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-1471137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.3E-1176128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010106Biological Processcellular response to iron ion starvation
GO:0055072Biological Processiron ion homeostasis
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MCALAPFPTP NWPLVNPIGY EHNYMMYEGG SECLESFLQF PPPPQEGIPL ESLSPASNFT  60
QTSNSDPCIV KKLNHNASER DRRKKVNNMY SSLRSLLPVA DQTKKLSFPA TVSHALKYIP  120
ELQQQVERLV QKKEELLLRI SEQGGVKPSE ENEEERKRNN RKQGRCLSGV GVSINRLSDG  180
EVAIQISMRE VDKRNALLSE MLQYLEQQGF LLLNVSSFES FGGVVFYNIH LQMELETSRK  240
MGSEEALSEK ILALCYNREE LGL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5883332e-65JX588333.1 Gossypium hirsutum clone NBRI_GE22730 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012442546.10.0PREDICTED: transcription factor ORG2-like isoform X1
TrEMBLA0A0D2QB210.0A0A0D2QB21_G
STRINGVIT_08s0007g05300.t013e-64(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM48228153
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56970.12e-54bHLH family protein
Publications ? help Back to Top
  1. Paterson AH, et al.
    Repeated polyploidization of Gossypium genomes and the evolution of spinnable cotton fibres.
    Nature, 2012. 492(7429): p. 423-7
    [PMID:23257886]